Needle
An application for fast and efficient searches of NGS data.
estimate.h
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1 // -----------------------------------------------------------------------------------------------------
2 // Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin
3 // Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik
4 // This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5 // shipped with this file and also available at: https://github.com/seqan/needle/blob/master/LICENSE.md
6 // -----------------------------------------------------------------------------------------------------
7 
8 #pragma once
9 
10 #include <filesystem>
11 
12 #include "shared.h"
13 
22 {
23  std::filesystem::path search_file;
24  std::filesystem::path path_in{"./"};
25  // false: no normalization method, true: division by first expression value
27 };
28 
33 void call_estimate(estimate_ibf_arguments & args, estimate_arguments & estimate_args);
void call_estimate(estimate_ibf_arguments &args, estimate_arguments &estimate_args)
Function, which calls the estimate function.
Definition: estimate.cpp:253
The arguments necessary for a search.
Definition: estimate.h:22
bool normalization_method
Definition: estimate.h:26
std::filesystem::path path_in
Definition: estimate.h:24
std::filesystem::path search_file
Definition: estimate.h:23
arguments used for estimate, ibf, ibfmin
Definition: shared.h:41